PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G13410.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 260aa    MW: 28040.6 Da    PI: 9.9389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G13410.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.55.8e-4591441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrF+Ptdeelvv+yL++++ g++l+ +  i++v+++ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v 
  OGLUM12G13410.2   9 LPPGFRFRPTDEELVVHYLRRRALGSPLPPAVDIPDVRLLAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVA 100
                      79*************************998556**************43..3447899***********************************9 PP

              NAM  94 sk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++            +vg+k++Lvfy+g+ p+g+ktdWvmheyrl
  OGLUM12G13410.2 101 VSvvaaprsqaAAVVVGMKRSLVFYRGKPPTGKKTDWVMHEYRL 144
                      988888765544455***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-495176IPR003441NAC domain
PROSITE profilePS5100548.9089176IPR003441NAC domain
PfamPF023658.5E-2710144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
METTAAKKLP PGFRFRPTDE ELVVHYLRRR ALGSPLPPAV DIPDVRLLAH DPSDLLPPGW  60
SEQERYFFTC KEAKYVKGRR ANRATGAGYW KATGKEKPVA VSVVAAPRSQ AAAVVVGMKR  120
SLVFYRGKPP TGKKTDWVMH EYRLAGAGLA PCRRAATADH PARPAEGWVL CRVFRKKGSA  180
AASTASPTAD ADDDDATTER ADDAAAGVRF IDFFARADAR RRRAASPVSS SCVTDASAEH  240
CREQETTSRN GGAAAGDASD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-3921798171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432440.0AK243244.1 Oryza sativa Japonica Group cDNA, clone: J100046N20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618303.10.0PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY932e-53NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0E0BSN10.0A0A0E0BSN1_9ORYZ; Uncharacterized protein
STRINGLOC_Os12g29330.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-50NAC domain containing protein 83